There is a large number of references available, relevant to Permian-Triassic Boundary microbialites; below is a list that will give you most of the information you need.


Here is a collection of references for Permian-Triassic boundary microbialites (PTBMs). They are taken from reference lists of papers, and may be missing the most recent references. However, this list will give you nearly all of the papers you would need to get a good background understanding of the PTBMS.

Algeo T (2010) Anomalous Early Triassic sediment fluxes due to elevated weathering rates. Journal of Earth Sciences, 21, Special Issue, 107-110.
Algeo TJ,  Ellwood B, Nguyen TKT, Rowe H, Maynard JB (2007) The Permian-Triassic boundary at Nhi Tao, Vietnam; evidence for recurrent influx of sulfidic watermasses to a shallow-marine carbonate platform. Palaeogeography, Palaoeclimatology, Palaeoecology, 252, 304-327.
Algeo T, Elswick TJ, Hinnov L, Ellwood B, Moser J, Maynard JB (2010) Spatial variation in sediment fluxes, redox conditions, and productivity in the Permian-Triassic Panthalassic Ocean. Palaeogeography, Palaoeclimatology, Palaeoecology, 308, 65-83
Allen MA, Neilan BA, Burns BP, Jahnke LL, Summons RE (2010) Lipid biomarkers in Hamelin Pool microbial mats and stromatolites. Organic Geochemistry, 41, 1207-1218.
Altiner D, Baud A, Guex J, Stampfli G (1980) La limite Permien– Trias dans quelques localités du Moyen-Orient : recherches stratigraphiques et micropaléontologiques, Riv. Itialiano Paleontologie et Stratigraphie, 85,  683–714.
Angiolini L, Carabelli L, Nicora A, Crasquin-Soleau S, Marcoux J, Rettori R (2007) Brachiopods and other fossils from the Permo-Triassic boundary beds of the Antalya Nappes (SW Taurus, Turkey). Geobios, 40, 715-729.
Baud A, Bernecker M. (eds.) (2010) The Permian-Triassic transition in the Oman Mountains, IGCP 572 Field Guide Book 2: Muscat, GUtech, 109 pp.
Baud A, Cirilli S, Marcoux J (1997) Biotic response to mass extinction: the lowermost Triassic microbialites. In: Biosedimentology of microbial buildups (eds. Neuweiler F, Monty C). Facies, 36, pp. 227-230.
Baud A, Béchennec F, Cordey F, Le Métour J, Marcoux J, Maury R, Richoz S (2001) Permo-Triassic Deposits: from shallow water to base of slope. Conference on the Geology of Oman, Field guidebook,  B01: Muscat, Oman,  40 pp.
Baud A, Richoz S, Marcoux J (2005) Calcimicrobial cap rocks from the basal Triassic units: western Taurus occurrences (SW Turkey). Comptes Rendus Palevol, 4, 569–582.
Baud A, Richoz S, Pruss S (2007) The Lower Triassic anachronisitic carbonate facies in space and time. Global and Planetary Change, 55, 81-89.
Berner RA (2005) The carbon and sulfur cycles and atmospheric oxygen from middle Permian to middle Triassic. Geochimica et Cosmochimica Acta, 69, 3211-3217.
Bond D, Wignall P (2010) Pyrite framboid study of marine Permian–Triassic boundary sections: A complex anoxic event and its relationship to contemporaneous mass extinction. Geological Society of America Bulletin, 28, 1265-1279.
Brühweiler T, Goudemand N, Galfetti T, Bucher H, Baud A, Ware D, Hermann E, Hochuli PA, Martini R (2009) The Lower Triassic sedimentary and carbon isotope records from Tulong (South Tibet) and their significance for Tethyan palaeoceanography. Sedimentary Geology, 222, 314–332.
Cao C, Zheng Q, (2009) Geological event sequences of the Permian-Triassic transition recorded in the microfacies in Meishan. Science in China (Series D Earth Sciences), 52, 1529-1536.
Chen J, Beatty TW, Henderson CM, Rowe H (2009) Conodont biostratigraphy across the Permian-Triassic boundary at the Dawen section, Great Bank of Guizhou, Guizhou Province, South China: Implications for the Late Permian extinction and correlation with Meishan. Journal of Asian Earth Sciences, 36, 442-458. 
Collin P-Y, Kershaw S, Crasquin S, Feng Q (2009) Facies changes and diagenetic processes across the Permian-Triassic boundary event horizon, Great Bank of Guizhou, South China: a controversy of erosion and dissolution. Sedimentology, 56, 677-693.
Crasquin-Soleau, S. and Kershaw, S (2005) Ostracod fauna from the Permian-Triassic Boundary Interval of South China (Huaying Mountains, eastern Sichuan Province): palaeoenvironmental significance. Palaeogeography, Palaeoclimatology, Palaeoecology, 217, 131-141.
Danovaro R, Dell’Anno A, Pusceddu A, Gambi C, Heiner I, Kristensen RM, (2010) First metazoa living permanently in anoxic conditions. BMC Biology 8, doi:10.1186/1741-7007-8-30.
Edwards D (1990) Cement Reefs. Unpublished PhD thesis, University of Wales, UK.
Erwin DH (2006) Extinction. Princeton University Press, 296pp.
Ezaki Y, Liu J, Adachi N (2003) Earliest Triassic microbialite micro- to megastructures in the Huaying area of Sichuan Province, south China: implications for the nature of oceanic conditions after the end-Permian extinction. Palaios, 18, 388-402.
Ezaki Y, Liu J, Nagano T, Adachi, N (2008) Geobiological aspects of the earliest Triassic microbialites along the southern periphery of the tropical Yangtze Platform: initiation and cessation of a microbial regime. Palaios, 23, 356-369. 
Feng Q, Gong Y-M, Riding R (2010) Mid-Late Devonian calcified marine algae and cyanobacteria, South China. Journal of Paleontology, 84, 569-587.
Fischer R, Michalzik D, Helm C (2007) Microhermal nodules of Renalcis-like calcimicrobes from Oxfordian limestones of the Sierra Madre Oriental (Novillo Formation, Mexico). Facies, 53, 239-248.
Flügel E (2002) Triassic Reef Patterns. In: Phanerozoic reef patterns (eds. Kiessling W, Flügel E, Golonka J). SEPM Special Publication, 72, pp. 391-463.
Flügel E (2004) Microfacies of carbonate rocks; analysis interpretation and application. Springer, Berlin. 976pp.
Forel M-B, Crasquin S, Kershaw S, Feng QL, Collin P-Y (2009) Ostracods (Crustacea) and water oxygenation in the earliest Triassic of South China: implications for oceanic events at the end-Permian mass extinction. Australian Journal of Earth Sciences, 56, 815-823.
Gaetani M, Angiolini L, Katsumi U, Nicora A, Stephenson MH, Sciunnach D, Rettori R, Price GD, Sabouri J (2009) Pennsylvanian to Early Triassic stratigraphy in Alborz Mountains (Iran). In: South Caspian to Central Iran Basins, (eds. Brunet MF, Wilmsen M, Granath JW). Geological Society of London, Special Publications, 312, 79–127.
Garzanti E, Nicora A, Rettori R (1998) Permo-Triassic boundary and lower to middle Triassic in south Tibet. Journal of Asian Earth Sciences, 16, 143– 157.
Gingras M, Hagadorn JW, Seilacher A, Lalonde SV, Pecoits E, Petrash D, Konhauser K, (2011) Possible evolution of mobile animals in association with microbial mats. Nature Geoscience, DOI: 10.1038/NGEO1142.
Golonka J (2002) Plate-tectonic maps of the Phanerozoic. In: Phanerozoic reef patterns (eds. Kiessling W, Flügel E, Golonka J). SEPM Special Publication, 72, 21–76.
Grotzinger JP, Knoll AH (1995) Anomalous carbonate precipitates: is the Precambrian the key to the Permian? Palaios, 10, 578-596.
Groves JR, Calner M (2004) Lower Triassic oolites in Tethys: a sedimentologic response to the end-Permian mass extinction. Geological Society of America Abstracts with Programs, 36, No. 5, p. 336
Groves JR, Rettori R, Payne JL, Boyce MD, Altiner D (2007) End-Permian mass extinction of lagenide foraminifers in the southern Alps (northern Italy). Journal of Paleontology, 81, 2007, 415–434.
Guo L, Riding R (1992) Microbial micritic carbonates in uppermost Permian reefs, Sichuan Basin, southern China: some similarities with Recent travertines. Sedimentology, 39, 37-53.
Hautmann M, Bucher H, Brüwhiler T, Goudemand N, Kaim A, Nützel A (in press) An unusually diverse mollusc fauna from the earliest Triassic of South China and its implications for benthic recovery after the end-Permian biotic crisis. Geobios.
Hips K, Haas J (2006) Calcimicrobial stromatolites at the Permian-Triassic boundary in a western Tethyan section, Bükk Mountains, Hungary. Sedimentary Geology, 185, 239-253.
Hips K, Haas J (2009). Facies and diagenetic evaluation of the Permian-Triassic boundary interval and basal Triassic carbonates: shallow and deep ramp sections, Hungary. Facies, 55, 421-442.
Insalaco E, Virgone A, Courme B, Gaillot J, Kamali M, Moallemi A, Lotfpour M, Monibi S (2006) Upper Dalan Member and Kangan Formation between the Zagros  Mountains and offshore Fars, Iran: depositional system,  biostratigraphy and stratigraphic architecture. GeoArabia, 11, 75 – 176.
Iranian-Japanese Research Group (1981) The Permian and the Lower Triassic Systems in Abadeh Region, Central Iran, Memoirs of the Faculty of Science, Kyoto University, Series Geology & Mineralogy, XLVII, 61–133.
Horacek M, Brandner R, Richoz S, Krystyn L, (2010) Temporal decoupling of deep-ocean and surface water in the Tethys: evidence from the carbon isotope curve. GSA Annual Meeting, Denver, Colorado, Session T120: New Developments in Permian-Triassic Paleoceanography, Abstract 17750.
Isozaki Y (1997) Permo-Triassic superanoxia and stratified superocean: records from the lost deep sea. Science, 276, 235-238.
Jia, C., Huang, J., Kershaw, S., Luo, G., Farabegoli, E., Perri, M.C., Chen, L., Bai, X. and Xie, S. 2012. Microbial response to limited nutrients in shallow water immediately after the end-Permian mass extinction. Geobiology, 10(1), 60-71.
Jiang H, Lai X, Luo G, Aldridge R, Zhang K, Wignall P (2007) Restudy of conodont zonation and evolution across the P/T boundary at Meishan section, Changxing, Zhejiang, China. Global and Planetary Change, 55, 39-55.
Kershaw S, Zhang T, Lan G (1999) A ?microbialite crust at the Permian-Triassic boundary in south China, and its palaeoenvironmental significance.  Palaeogeography, Palaeoclimatology, Palaeoecology, 146, 1-18.
Kershaw S, Guo L, Swift A, Fan J (2002). ?Microbialites in the Permian-Triassic boundary interval in central China: structure, age and distribution. Facies, 47, 83-90.
Kershaw S, Li Y, Crasquin-Soleau S, Feng Q, Mu X, Collin P-Y, Reynolds A, Guo L (2007) Earliest Triassic microbialites in the South China block and other areas: controls on their growth and distribution. Facies, 53, 409-425.
Kershaw S, Crasquin S, Forel M-B, Randon C, Collin P-Y, Kosun E, Richoz S, Baud A (2010) Earliest Triassic microbialites in Çürük Dag, southern Turkey; composition, sequences and controls on formation. Sedimentology, 58, 739-755.
Kershaw, S., Crasquin, S., Li, Y., Collin, P-Y., Forel, M-B., Mu, X., Baud, A., Wang, Y., Xie, S., Maurer, F. and Guo, L. 2012.  Microbialites and global environmental change across the Permian-Triassic boundary: a synthesis. Geobiology, 10(1), 25–47. 
Kiessling W (2002) Secular variations in the Phanerozoic reef ecosystem. In: Phanerozoic reef patterns (eds. Kiessling W, Flügel E, Golonka J). SEPM Special Publication, 72, pp. 625-690.
Knoll AH, Bambach RK, Canfield DE, Grotzinger JP (1996) Comparative Earth History and Late Permian mass extinction. Science, 273, 452-457.
Korte C, Kozur K (2010) Carbon-isotope stratigraphy across the Permian-Triassic boundary: a review. Journal of Asian Earth Sciences, 39, 24-36.
Krull ES, Lehrmann DJ, Druke D, Kessel B, Yu Y, Li R (2004) Stable carbon isotope stratigraphy across the Permian-Triassic boundary in shallow marine carbonate platforms, Nanpanjiang Basin, South China. Palaeogeography, Palaeoclimatology, Palaeoecology, 204, 297-315.
Liao W, Wang Y, Kershaw S, Weng Z, Yang H (2010) Shallow marine dysoxia across the Permian-Triassic boundary; evidence from pyrite framboids in the microbialite in South China. Sedimentary Geology, 232, 77-83.
Lehrmann DJ (1999) Early Triassic calcimicrobial mounds and biostromes of the Nanpanjiang Basin, South China. Geology, 27, 359-362.
Luo G, Wang Y, Algeo, TJ, Kump LR, Bai X, Yang H, Yao L, Xie S, (2011) Enhanced nitrogen fixation in the immediate aftermath of the latest Permian marine mass extinction. Geology, 39, 647-650.
Maurer F, Martini R, Rettori R, Hillgärtner H, Cirilli S (2009) The geology of Khuff outcrop analogues in the Musandam Peninsula, United Arab Emirates and Oman GeoArabia, 14, 125-158.
Mu X, Kershaw S, Li Y, Guo L, Qi Y, Reynolds A (2009). High-resolution carbon isotope changes in the Permian–Triassic boundary interval, Chongqing, South China; implications for control and growth of earliest Triassic microbialites. Journal of Asian Earth Sciences, 36, 434-441.
Nabbefeld B, Grice K, Twitchett RJ, Summons RE, Hays L, Böttcher ME, Asif M (2010) An integrated biomarker, isotopic and palaeoenvironmental study through the Late Permian event at Lusitaniadalen, Spitsbergen. Earth and Planetary Science Letters, 291, 84-96.
Olivier N, Hantzpergue P, Gaillard C, Pittet B, Leinfelder RR, Schmid DU, Werner W (2003) Microbialite morphology, structure and growth : a model of the Upper Jurassic reefs of the Chay Peninsula (Western France). Palaeogeography, Palaeoclimatology, Palaeoecology, 193, 383-404. 
Payne J L, Lehrmann DJ, Follett D, Seibel M, Kump LR, Riccardi A, Altiner D, Sano H, Wei J (2007) Erosional truncation of uppermost permian shallow-marine carbonates and implications for Permian-Triassic boundary events. Geological Society of America Bulletin, 119, 771–784.
Payne J.L, Turchyn AV, Paytan A, DePaolo DJ, Lehrmann DJ, Yu M, Wei J (2010) Calcium isotope constraints on the end-Permian mass extinction. PNAS, 107, 8543–8548. 
Pruss SB, Bottjer DJ, Corsetti FA, Baud A (2006) A global marine sedimentary response to the end-Permian mass extinction: examples from southern Turkey and the western United States. Earth Science Reviews, 78, 193-206.
Richoz S (2006) Stratigraphie et variations isotopiques du Carbon  dans le Permien supérieur et le Trias inférieur de la Néotéthys (Turquie, Oman et Iran). Mémoires de Géologie (Lausanne), 46, 264 pp.
Richoz S, Baud A, Krystyn L, Twitchett R, Marcoux J (2005) Permo-Triassic Deposits of the Oman Mountains: from Basin and Slope to the shallow Platform, 24th IAS regional Meeting, Field guidebook A13, Muscat, 57pp. 
Richoz S, Krystyn L, Baud A, Brandner R, Horacek M, Mohtat-Aghai P (2010) Permian-Triassic boundary interval in Middle East (Iran and N. Oman): Progressive environmental change from detailed carbonate carbon isotope marine curve and sedimentary evolution. Journal of Asian Earth Sciences, 39, 236-253.
Riding R (2000) Microbial carbonates: the geological record of calcified bacterial-algal mats and biofilms. Sedimentology, 47 (Suppl 1), 179-214.
Riding R (2005) Phanerozoic reefal microbial carbonate abundance: comparisons with metazoan diversity, mass extinction events, and seawater saturation state. Revista Espanola de Micropaleontologia, 37, 23-39.
Riding R (2008) Abiogenic, microbial and hybrid authigenic carbonate crusts: components of Precambrian stromatolites. Geologia Croatia, 61, 73-103.
Riding R (2011) Reefal microbial crusts. In Hopley D (ed.), Encyclopedia of Modern Coral Reefs. Encyclopedia of Earth Science Series, Springer, Heidelberg, 911-915),
Riding R, Soja C (1993) Silurian calcareous algae, cyanobacteria, and microproblematica from the Alexander Terrane, Alaska. Journal of Paleontology, 67, 710-728.
Sano H, Nakashima K (1997) Lowermost Triassic (Griesbachian) microbial bindstone-cementstone facies, southwest Japan. Facies, 36, 1-24.
Schubert J K, Bottjer D J (1992) Early Triassic stromatolites as post-mass extinction disaster forms. Geology, 20, 883-886.
Sedlacek A, Saltzman M (2010) Evidence for an earliest Triassic microbialite from the Confusion Range, Utahs. GSA poster Abstract # 179673.
Self S, Widdowson M, Thordarson T, Jay AE (2006) Volatile fluxes during flood basalt eruptions and potential effects on the global environment: a Deccan perspective. Earth and Planetary Science Letters, 248, 518-532.
Sepkoski JJ Jr, Bambach RK, Droser ML (1991) Secular changes in Phanerozoic event bedding and the biological overprint. In: Cycles and events in stratigraphy (eds. Einsele G, Ricken W, Seilacher A). Berlin, Springer, pp. 298-312.
Shen J-W, Webb GE (2004a) Famennian (Upper Devonian) calcimicrobial (Renalcis) reef at Miaomen, Guilin, Guangxi, South China. Palaeogeography, Palaeoclimatology, Palaeoecology, 204, 373-394.
Shen J-W, Webb GE (2004a) Famennian (Upper Devonia) stromatolite reefs at Shatang, Guilin, Guangxi, South China. Sedimentary Geology, 170, 63-84.
Shen J-W, Xu H-L (2005) Microbial carbonates as contributors to Upper Permian (Guadalupian-Lopingian) biostromes and reefs in carbonate platform margin setting, Ziyun County, South China. Palaeogeography, Palaeoclimatology, Palaeoecology, 218, 217-238.
Sobolev SV, Sobolev AV, Kuzmin DV, Krivolutskaya NA, Petrunin AG, Arndt NT, Radko VA, Vasiliev YR (2011) Linking mantle plumes, large igneous provinces and environmental catastrophes. Nature 477, 312-316.
Soja C, Riding R (1993) Silurian microbial associations from the Alexander Terrane, Alaska. Journal of Paleontology, 67, 728-738.
Son TH, Koerberl C, Ngoc NL, Huyen DT (2007) The Permian-Triassic boundary sections in northern Vietnam (Nhi Tao and Lung Cam sections): Carbon-isotope excursion and elemental variations indicate major anoxic event. Palaeoworld, 16, 51–66.
Stephens N, Sumner D (2002) Renalcids as fossilized biofilm clusters. Palaios, 17, 225-236.
Summons RE, Jahnke LL, Hope JM, Logan GA (1999). 2-Methylhopanoids as biomarkers for cyanobacterial oxygenic photosynthesis. Nature, 400, 554-557.
Svensen H, Planke S, Polozov AG, Schmidbauer N, Corfu F,  Podladchikov YY, Jamtveit B (2009) Siberian gas venting and the end-Permian environmental crisis. Earth and Planetary Science Letters, 277, 490–500.
Twitchett R, Price GD, Jacobsen N (2010) Extreme palaeotemperature change across the Late Permian extinction event: new data from northern Italy. Geological Society of America Abstracts, Symposium T120: New Developments in Permian-Triassic Paleoceanography, Abstract 179515.
Wang W, Kano A, Okumura T, Ma Y, Matsumoto R, Matsuda N, Ueno K, Chen X, Kakuwa Y, Gharaie MHM, Ilkhchi MR (2007) Isotopic chemostratigraphy of the microbialite-bearing Permian–Triassic boundary section in the Zagros Mountains, Iran. Chemical Geology, 244, 708–714.
Weidlich O (2002) Middle and Late Permian reefs – distributional patterns and reservoir potential. In: Phanerozoic reef patterns (eds. Kiessling W, Flügel E, Golonka J). SEPM Special Publication, 72, pp. 339-390.
Whalen MT, Day J, Eberli GP, Homewood PW (2002) Microbial carbonates as indicators of environmental change and biotic crises in carbonate systems: examples from the Late Devonian, Alberta Basin, Canada. Palaeogeography Palaeoclimatology Palaeoecology, 181, 127-151.
Wignall P, Twitchett R (2002a) Sedimentology of Jameson Land, East Greenland: incised submarine channels in an anoxic basin. Journal of Geological Society, London, 159, 691-703.
Wignall PB, Twitchett RJ (2002b) Extent, duration and nature of the Permian–Triassic superanoxic event. In: Catastrophic events and mass extinctions: impacts and beyond (eds. Koerberl C, MacLeod KG). Geological Society of America Special Paper 356, pp. 395–413.
Woods AD, Bottjer DJ, Mutti M, Morrison J (1999) Lower Triassic large sea-floor carbonate cements: their origin and a mechanism for the prolonged biotic recovery from the end-Permian mass extinction. Geology, 27, 645-648.
Xie S, Pancost RD, Huang J, Wignall PB, Yu J, Tang X, Chen L, Huang X, Lai L (2007) Changes in the global carbon cycle occurred as two episodes during the Permian-Triassic crisis. Geology, 35, 1083-1086.
Xie S, Pancost RD, Wang Y, Yang H, Wignall PB, Luo G, Jia C, Chen L (2010) Cyanobacterial blooms tied to volcanism during the 5 m.y. Permo-Triassic biotic crisis. Geology, 38, 447-450.
Yang H, Chen Z, Wang Y, Tong J, Song H, Chen J (2011) Composition and structure of microbialite ecosystems following the end-Permian mass extinction in South China. Palaeogeography, Palaeoclimatology, Palaeoecology, 308, 111-128.
Zhao XM, Tong J, Yao HZ, Zhang KX, Chen ZQ (2008) Anachronistic facies in the Lower Triassic of South China and their implications to the ecosystems during the recovery time. Science in China Series D: Earth Sciences, 51, 1646-1657.
Zhuravlev YA, Wood RA (2009) Controls on carbonate skeletal mineralogy: global CO2 evolution and mass extinctions. Geology, 37, 1123-1126.

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